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Linux software voor medewerkers en studenten van FNWI

Beschikbare software op door C&CZ beheerde Linux-computers

Name Version Category Description Installer available On CD/DVD Run from network share Standard for Windows Frequently installed Optionally installed Windows Linux OS X
Aips Astronomy The NRAO Astronomical Image Processing System (AIPS) is a software package for interactive (and, optionally, batch) calibration and editing of radio interferometric data and for the calibration, construction, display and analysis of astronomical images made from those data using Fourier synthesis methods.
Anaconda 2.4.4 Scienctific Anaconda is een open source distributie van de Python en R programmeertalen tbv data analyse met het doel om package management en deployment te vereenvoudigen door gebruik te maken van conda.
Brig 0.95 Science BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.
Cabal Cabal is a system for building and packaging Haskell libraries and programs.
Caffe Scientific Caffe is a deep learning framework made with expression, speed, and modularity in mind.
Dropbox Dropbox is een clouddienst voor het online opslaan van bestanden.
Fail2ban Fail2ban is an intrusion prevention software framework which protects computer servers from brute-force attacks.
Famias FAMIAS (Frequency Analysis and Mode Identification for Asteroseismology) is a package of state-of-the art software tools for the analysis of photometric and spectroscopic time-series data.
Freesurfer 5.3 An open source software suite for processing and analyzing (human) brain MRI images.
Geany Software Development Geany is a text editor using the GTK2 toolkit with basic features of an integrated development environment.
GitLfs v1.2.1 An open source Git extension for versioning large files
Graphviz Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks.
Grass 7.2 Science GRASS GIS, commonly referred to as GRASS (Geographic Resources Analysis Support System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization.
Haskell 8.0.1 Haskell is een functionele programmeertaal vernoemd naar de wiskundige Haskell Brooks Curry.
Iraf Image Reduction and Analysis Facility, a general purpose software system for the reduction and analysis of astronomical data.
Jags 4.2.0 Science JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS.
Magma Magma is a software package designed for computations in algebra, number theory, algebraic geometry and algebraic combinatorics.
Maple 2015 Computer algebra system
2017
Mathematica Math Wiskundig softwarepakket van Wolfram Research
Matlab R2010b Scientific MATLAB (oorspronkelijk MATrix LABoratory) is een technische softwareomgeving uitgegeven door The Mathworks en wordt gebruikt in zowel de industrie als de academische wereld voor allerhande wiskundige toepassingen zoals het berekenen van functies, bewerken van matrices, statistiek, tekenen van grafieken, schrijven en implementeren van algoritmen en het maken van grafische gebruikersinterfaces.
R2012b
R2013b
R2014b
R2015a
R2015b
R2016a
R2017a
MatlabR2017b
MongoDB MongoDB is an open-source, document database designed for ease of development and scaling
Parallel 20150322 Utils GNU parallel is a shell tool for executing jobs in parallel using one or more computers.
Povray 3.7 Graphics Persistence of Vision Raytracer
Pyzo 4.4.1 Pyzo is a free and open-source computing environment based on Python.
R Statistics R is a free software environment for statistical computing and graphics.
Root 5.34 Scientific The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way.
6.08
Rstudio RStudio IDE is a powerful and productive user interface for R.
SPSS 19 Statistics Statistical Package for the Social Sciences
Skype Skype is een VoIP-programma, waarmee men over het internet kan telefoneren.
Spyder Software development Python IDE
Sqlite 3 Software development Command line client for sqlite3 databases.
Taskspooler Task spooler is a Unix batch system where the tasks spooled run one after the other.
TauDEM 5 TauDEM (Terrain Analysis Using Digital Elevation Models) is een tool suite voor Digital Elevation Model (DEM) topologien ten behoeve van hydrologische informatie extractie en analyse.
Triqs Scientific TRIQS (Toolbox for Research on Interacting Quantum Systems) is a scientific project providing a set of C++ and Python libraries to develop new tools for the study of interacting quantum systems.
Utrecht Scientific Eval Program Suite
Vagrant 1.8.5 Vagrant enables users to create and configure lightweight, reproducible, and portable development environments.
Vesta Scientific VESTA is a 3D visualization program for structural models, volumetric data such as electron/nuclear densities, and crystal morphologies.
Wireshark Wireshark is a network packet analyzer.
Wkhtmltopdf 0.12.3 Open source command line tools to render HTML into PDF and various image formats using the Qt WebKit rendering engine.
Workrave Workrave assists in the recovery and prevention of Repetitive Strain Injury (RSI)
jq jq is a lightweight and flexible command-line JSON processor
kpcli 3.1 A command line interface (interactive shell) to work with KeePass database files
w3m Internet W3m is a text-based web browser.


  • Allerlei software in /usr/local, /opt/ en /vol/
  • Ubuntu packages
    • Een complete lijst van de duizenden Ubuntu packages die geïnstalleerd zijn, is te zien met het commando:
       aptitude search "[a-z]" | grep ^i 

Een nog veel grotere lijst van alle Ubuntu packages die geïnstalleerd kunnen worden, is te zien met het commando:

       aptitude search "[a-z]"

Stuur een mail naar postmaster wanneer je een extra software package geïnstalleerd wil hebben.


Om zelf te installeren op een zelfbeheerde Linux PC

Op de Install netwerkschijf is de onderstaande software voor Linux te vinden:

Te leen bij C&CZ

Op dit moment is bij C&CZ op kamer HG03.055 de volgende Linux software te lenen door medewerkers en studenten van de B-faculteit:

  • Operating system: